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Validate Cohort Results Completeness

Source: R/postProcess.R
validateCohortResults.Rd

Validates that all cohorts in the cohort key have results and checks for non-enumeration. Compares expected cohorts from cohortKey.csv against actual results to identify missing or zero-count cohorts.

Usage

validateCohortResults(
  exportPath = here::here("dissemination/export/merge"),
  resultsFileName = NULL
)

Arguments

exportPath

Character. Path to export folder containing results. Defaults to "dissemination/export/merge"

resultsFileName

Character. Name of the results file to validate (e.g., "cohortCounts.csv"). If NULL, searches for a file with cohort_id, cohort_entries, and cohort_subjects columns.

Value

Data frame with columns:

  • cohortId: The cohort ID

  • label: Cohort label from cohortKey

  • validationStatus: "OK", "ZeroCount", or "Missing"

  • details: Additional information about the validation result

Details

The function identifies three validation statuses:

  • OK: Cohort exists in results with non-zero counts

  • ZeroCount: Cohort exists but has zero entries or subjects

  • Missing: Cohort in cohortKey but not found in results (non-enumerated)