Import and Bind Results by Version and Task

Combines result files across multiple database runs for a specific version and task. Finds all CSV files in the task folder for each database and combines them into named results, then saves them to the export folder.

Usage

importAndBind(
  version,
  taskName,
  dbIds,
  resultsPath = here::here("exec/results"),
  exportPath = here::here("dissemination/export/merge")
)

Arguments

version

Character. Pipeline version (e.g., "1.0.0")

taskName

Character. Name of the task (e.g., "cohortCounts", "characterization")

dbIds

Character vector of database configuration IDs from config.yml

resultsPath

Character. Path to results root folder. Defaults to "exec/results"

exportPath

Character. Path where combined results will be saved. Defaults to "dissemination/export/merge"

Value

Invisibly returns data frame of export summary with columns: fileName, rowCount, databaseCount

Details

Folder structure expected:

exec/results/

  databaseName1/

    version/

      taskName/

        file1.csv

        file2.csv

  databaseName2/

    version/

      taskName/

        file1.csv

        file2.csv

All files with the same name from each database are combined with databaseId added and saved to exportPath.